Bioinformatician A/B (Department of Pathology and Laboratory Medicine)
University of Pennsylvania

Job Info

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University Overview

The University of Pennsylvania, the largest private employer in Philadelphia, is a world-renowned leader in education, research, and innovation. This historic, Ivy League school consistently ranks among the top 10 universities in the annual U.S. News & World Report survey. Penn has 12 highly-regarded schools that provide opportunities for undergraduate, graduate and continuing education, all influenced by Penn's distinctive interdisciplinary approach to scholarship and learning. As an employer Penn has been ranked nationally on many occasions with the most recent award from Forbes who named Penn one of America's Best Large Employers in 2023.

Penn offers a unique working environment within the city of Philadelphia. The University is situated on a beautiful urban campus, with easy access to a range of educational, cultural, and recreational activities. With its historical significance and landmarks, lively cultural offerings, and wide variety of atmospheres, Philadelphia is the perfect place to call home for work and play.

The University offers a competitive benefits package that includes excellent healthcare and tuition benefits for employees and their families, generous retirement benefits, a wide variety of professional development opportunities, supportive work and family benefits, a wealth of health and wellness programs and resources, and much more.

Posted Job TitleBioinformatician A/B (Department of Pathology and Laboratory Medicine)Job Profile TitleBioinformatician AJob Description SummaryApply principles and methods of bioinformatics to assist scientists, principal investigator and other laboratory team members. Discuss study design with research team, and apply bioinformatics tools to visualize, analyze, manipulate or interpret molecular data. May build and maintain databases for processing and analyzing genomic or other biological information.Job Description

Job Responsibilities

Bioinformatician A: The Human Immunology Core at the University of Pennsylvania Perelman School of Medicine is seeking a skilled and motivated bioinformatician to join our team to analyze large immune repertoire datasets (next generation sequencing of antibody and T cell receptor gene rearrangements). This individual will be responsible for assuring the quality of sequencing data using existing tools, aggregating data into databases, creating relevant figures and statistical analyses on a per-project basis, and work with the lead bioinformatician to submit sequencing data to publicly available repositories.

Bioinformatician B: In addition to the duties described above for the Bioinformatician A, the Bioinformatician B will create and document reusable software tools that can be used across multiple projects, providing clients with figures and data that is relevant to their project. The bioinformatician will also assist with employee training for routine data quality control, analysis and visualization. Finally, the bioinformatician will contribute to manuscripts, reports, and grant applications based on the biological significance of each dataset.

Position contingent upon funding*

Qualifications

• Bioinformatician A: Bachelor of Science and 3 years of experience or equivalent combination of education and experience is required.
• Bioinformatician B: Master's degree and 3 years of experience or equivalent combination of education and experience

• Bioinformatician A: This position requires knowledge of the command line, extensive experience with Python, relational databases, data visualization, and manipulating large datasets. Experience with formal software design patterns and testing is recommended but not required. A master's degree in computer science, bioinformatics, or data science is preferred. Experience writing scientific papers is also recommended but not required. The candidate should be willing to learn about immune repertoire profiling including understanding the nuance of wet-bench procedures through final data analysis.

  Bioinformatician B: In addition to the qualifications of the Bioinformatician A, the Bioinformatician B should have at least 1 year of work experience in biomedical data analysis, preferably in a role where the informatician needs to work closely with wet bench investigators generating multi-omics data (e.g., immunophenotyping, RNAseq, single cell sequencing data, immune repertoire profiling). Familiarity with immunology assays, creation of bioinformatics pipelines, software testing, and database management and/or laboratory information management systems (LIMS) would be additional areas of preferred expertise or experience.

Job Location - City, StatePhiladelphia, PennsylvaniaDepartment / SchoolPerelman School of MedicinePay Range$51,824.00 - $101,200.50 Annual RateSalary offers are made based on the candidate's qualifications, experience, skills, and education as they directly relate to the requirements of the position, as well as internal and market factors and grade profile. Affirmative Action Statement
Penn adheres to a policy that prohibits discrimination on the basis of race, color, sex, sexual orientation, gender identity, religion, creed, national or ethnic origin, citizenship status, age, disability, veteran status, or any other legally protected class.Special Requirements
Background check required after a conditional job offer is made. Consideration of the background check will be tailored to the requirements of the job.University Benefits

• Health, Life, and Flexible Spending Accounts: Penn offers comprehensive medical, prescription, behavioral health, dental, vision, and life insurance benefits to protect you and your family's health and welfare. You can also use flexible spending accounts to pay for eligible health care and dependent care expenses with pre-tax dollars.
• Tuition: Take advantage of Penn's exceptional tuition benefits. You, your spouse, and your dependent children can get tuition assistance here at Penn. Your dependent children are also eligible for tuition assistance at other institutions.
• Retirement: Penn offers generous retirement plans to help you save for your future. Penn's Basic, Matching, and Supplemental retirement plans allow you to save for retirement on a pre-tax or Roth basis. Choose from a wide variety of investment options through TIAA and Vanguard.
• Time Away from Work: Penn provides you with a substantial amount of time away from work during the course of the year. This allows you to relax, take vacations, attend to personal affairs, recover from illness or injury, spend time with family-whatever your personal needs may be.
• Long-Term Care Insurance: In partnership with Genworth Financial, Penn offers faculty and staff (and your eligible family members) long-term care insurance to help you cover some of the costs of long-term care services received at home, in the community or in a nursing facility. If you apply when you're newly hired, you won't have to provide proof of good health or be subject to underwriting requirements. Eligible family members must always provide proof of good health and are subject to underwriting.
• Wellness and Work-life Resources: Penn is committed to supporting our faculty and staff as they balance the competing demands of work and personal life. That's why we offer a wide variety of programs and resources to help you care for your health, your family, and your work-life balance.
• Professional and Personal Development: Penn provides an array of resources to help you advance yourself personally and professionally.
• University Resources: As a member of the Penn community, you have access to a wide range of University resources as well as cultural and recreational activities. Take advantage of the University's libraries and athletic facilities, or visit our arboretum and art galleries. There's always something going on at Penn, whether it's a new exhibit at the Penn Museum, the latest music or theater presentation at the Annenberg Center, or the Penn Relays at Franklin Field to name just a few examples. As a member of the Penn community, you're right in the middle of the excitement-and you and your family can enjoy many of these activities for free.
• Discounts and Special Services: From arts and entertainment to transportation and mortgages, you'll find great deals for University faculty and staff. Not only do Penn arts and cultural centers and museums offer free and discounted admission and memberships to faculty and staff. You can also enjoy substantial savings on other goods and services such as new cars from Ford and General Motors, cellular phone service plans, movie tickets, and admission to theme parks.
• Flexible Work Hours: Flexible work options offer creative approaches for completing work while promoting balance between work and personal commitments. These approaches involve use of non-traditional work hours, locations, and/or job structures.
• Penn Home Ownership Services: Penn offers a forgivable loan for eligible employees interested in buying a home or currently residing in West Philadelphia, which can be used for closing costs or home improvements.
• Adoption Assistance: Penn will reimburse eligible employees on qualified expenses in connection with the legal adoption of an eligible child, such as travel or court fees, for up to two adoptions in your household.

To learn more, please visit: https://www.hr.upenn.edu/PennHR/benefits-pay

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